Division of Infectious Diseases

Microbe Monday: Chlamydia trachomatis

Microbe Monday is a monthly installment featuring a microbe of clinical or scientific importance. This month, in recognition of STI Awareness month, we discuss Chlamydia trachomatis. The following content was provided by Natalie Sturd and Dr. Elizabeth Rucks– experts in Chlamydial biology at UNMC.

See here for our previous Microbe Monday posts.


Chlamydia trachomatis causes the most common bacterial sexually transmitted disease in both developed and developing nations, and rates of C. trachomatis infections have been steadily rising since the CDC began data collection in 19841. In developing countries, it is also the causative agent of blinding trachoma, which is the leading cause of preventable blindness. In the United States, we spend almost $700 million in direct medical costs towards treating chlamydial infections, which is second only to what we spend treating HIV and HPV. While there are readily available and effective antibiotic treatments for chlamydial infections, the challenges we face in health care involve the asymptomatic nature of most infections, as well as the pathologic consequences of repeat and/or chronic infections.

Pap smear showing C. trachomatis (H&E stain).

Indeed, for genital infections, 70-80% of infections in women and 40-50% in men are asymptomatic2, which means these infections regularly go unnoticed and untreated. Both untreated and repeat infections increase the risk of developing more serious chronic sequelae1. In the female reproductive tract, this can present as pelvic inflammatory disease (PID) and fibrosis of the reproductive tract, leading to ectopic pregnancy and tubal infertility. Current treatment regimens for chlamydial infections include the use of broad-spectrum antibiotics like doxycycline and/or azithromycin3, which can lead to the development of bacterial vaginosis (BV)4,5. BV is marked by an imbalance of vaginal microbiota with an increase of Lactobacillus and/or Garderella species and is treated with metronidazole, which indiscriminately eliminates both undesirable and desirable members of the vaginal microbiome3. Thus, despite awareness and available treatment, chlamydial infections remain a significant source of patient morbidity and constitute a serious financial burden on our healthcare system.

Chlamydia trachomatis inclusion bodies (brown) in a McCoy cell culture.

During the 6 million years that C. trachomatis has evolved with its human host6, its genome underwent reductive evolution, meaning it lost many of the genes found in other prokaryotes and retained a much smaller genome (~1.04Mbp; ~895 open reading frames). As a result of genome reduction, C. trachomatis is an obligate intracellular pathogen, meaning it requires the host cell to complete its developmental cycle. Chlamydia has a distinct biphasic developmental cycle, alternating between two morphological forms: the infectious, non-replicative elementary body (EB) and the non-infectious, replicative reticulate body (RB).  The developmental cycle begins with EB entry into the host cell, where it establishes an intracellular niche within a pathogen-specific vacuole, termed the inclusion. The EB rapidly differentiates into the RB, which continues to divide within the inclusion. During later stages of the developmental cycle, RBs asynchronously undergo secondary differentiation to create new EBs. Importantly, each stage of chlamydial development is marked by distinct patterns of gene transcription, as each stage has different nutritional, proteomic, and molecular requirements to continue to grow and avoid detection by the host. From within the inclusion, C. trachomatis must mediate specific host interactions and these interactions are critical for chlamydial pathogenesis. A family of chlamydial effector proteins known as inclusion membrane proteins (Incs) are the primary mediators of these kinds of interactions and are a primary focus in our lab. Inc-host protein interactions have been implicated in the modulation of cellular survival pathways, vesicular trafficking of exocytic vesicles, and inhibition of the host innate immune response, all of which are hypothesized to contribute to a successful infection and a limited host response.

Watch for our next post this week where we will feature the Rucks lab and dive into the research exploring this important pathogen conducted at UNMC.


Natalie Sturd (left) and Dr. Rucks (Right), C. trachomatis researchers at UNMC.

We in the Rucks lab hope to contribute towards improving prevention and infection outcomes from a basic science approach. Specifically, our work helps 1) understand how C. trachomatis establishes an infection in human tissues and 2) identify the outcome of infection in the host cells/tissues in regard to cell biology.

References

1. Centers for Disease Control and Prevention. Sexually Transmitted Disease Surveillance 2020. Atlanta: U.S. Department of Health and Human Services; 2022.

2. Shetty S, Kouskouti C, Schoen U, et al. Diagnosis of Chlamydia trachomatis genital infections in the era of genomic medicine. Brazilian Journal of Microbiology. 2021;52(3):1327-1339.

3. Workowski KA, Bachmann LH, Chan PA, et al. Sexually Transmitted Infections Treatment Guidelines, 2021. MMWR Recomm Rep. 2021;70(4):1-187.

4. Tamarelle J, Ma B, Gajer P, et al. Nonoptimal Vaginal Microbiota After Azithromycin Treatment for Chlamydia trachomatis Infection. J Infect Dis. 2020;221(4):627-635.

5. Unemo M, Bradshaw CS, Hocking JS, et al. Sexually transmitted infections: challenges ahead. Lancet Infect Dis. 2017;17(8):e235-e279.

6. Nunes A, Gomes JP. Evolution, phylogeny, and molecular epidemiology of Chlamydia. Infect Genet Evol. 2014;23:49-64.

Reminder: SHEA 2023 Starts Today. Where to Find Us

Today marks the first day of SHEA 2023 and UNMC ID is presenting throughout the conference. See below for a guide to where to find us.


Tuesday, April 11th, 2023

At 4:15 pm, Jasmine Marcelin, MD is giving a presentation entitled, ‘Disrupting Health Inequities in Emerging Infections”. SHEA Spring 2023 Opening Plenary-(Addressing Inequities in Healthcare Epidemiology: Where We Are and Where We’re Headed)‘. Location: Columbia BCD


Wednesday, April 12th, 2023

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has three posters presented during the ‘Networking Lunch with Posters’ session:

  • Jonathan Ryder, MD; In-Depth Assessment of Critical Access Hospital Stewardship Program Adherence to CDC’s Core Elements in Iowa and Nebraska. Poster #651.
  • Jenna Preuske, PharmD; Pharmacist Interventions for Appropriate COVID-19 Antiviral Therapy in Long-Term Care Facilities: A Public Health Initiative. Poster #520.
  • Erica Stohs, MD, MPH; Pneumonia Panel Results and Antibiotic Prescribing in COVID-19 Patients in 2020 vs 2022 (645). Poster #645

Thursday, April 13th, 2023

At 10am, Jasmine Marcelin, MD is giving a presentation entitled, ‘Building Trust of COVID-19 (and other) vaccines in the BIPOC Community‘. Location: Columbia BCD

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has one poster presented during the ‘Networking Lunch with Posters’ session:

  • Mackenzie Keintz, MD; Evaluation of Indication in a Urinalysis Driven Reflex Urine Culture Protocol at an Academic Medical Center. Poster #603.

Friday, April 14th, 2023

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has one poster presented during the ‘Networking Lunch with Posters’ session:

  • Scott Bergman, PharmD; Perioperative Cefazolin Prescribing Rates Following Suppression of Alerts for non-IgE Mediated Penicillin Allergies. Poster #581.

UNMC ID Recognizes STI Awareness Week/Month

April is Sexually Transmitted Infection (STI) awareness month. This second week of April in particular is set aside to educate and raise awareness about sexually transmitted infections, or STIs, and how they impact our lives. It is also a time to work towards reducing STI-related stigma, fear, and discrimination and a time to ensure people have the tools and knowledge for prevention, testing, and treatment.

The CDC estimates that about 20 percent of the U.S. population – one in five people – in the U.S. had an STI on any given day in 2018. Left undiagnosed or untreated, many STIs can lead to serious health problems and permanent damage, both in the short and long term. ID and primary care providers are on the frontlines of this crisis, and we would like to take this opportunity to recognize their work in identifying, diagnosing, and treating STIs- as early diagnosis and treatment is key to preventing associated complications.

UNMC ID is away this week at SHEA 2023, but watch our posts for the rest of April for a series on STI awareness month, including the microbes, research, and medicine involving STIs at UNMC.

Next Week is SHEA 2023: Where to Find Us

Next week, UNMC ID will be traveling to Seattle to take part in The Society of Healthcare Epidemiology of America’s (SHEA) annual conference. See below for a guide to where to find us next week in Washington.


Tuesday, April 11th, 2023

At 4:15 pm, Jasmine Marcelin, MD is giving a presentation entitled, ‘Disrupting Health Inequities in Emerging Infections”. SHEA Spring 2023 Opening Plenary-(Addressing Inequities in Healthcare Epidemiology: Where We Are and Where We’re Headed)‘. Location: Columbia BCD


Wednesday, April 12th, 2023

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has three posters presented during the ‘Networking Lunch with Posters’ session:

  • Jonathan Ryder, MD; In-Depth Assessment of Critical Access Hospital Stewardship Program Adherence to CDC’s Core Elements in Iowa and Nebraska. Poster #651.
  • Jenna Preuske, PharmD; Pharmacist Interventions for Appropriate COVID-19 Antiviral Therapy in Long-Term Care Facilities: A Public Health Initiative. Poster #520.
  • Erica Stohs, MD, MPH; Pneumonia Panel Results and Antibiotic Prescribing in COVID-19 Patients in 2020 vs 2022 (645). Poster #645

Thursday, April 13th, 2023

At 10am, Jasmine Marcelin, MD is giving a presentation entitled, ‘Building Trust of COVID-19 (and other) vaccines in the BIPOC Community‘. Location: Columbia BCD

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has one poster presented during the ‘Networking Lunch with Posters’ session:

  • Mackenzie Keintz, MD; Evaluation of Indication in a Urinalysis Driven Reflex Urine Culture Protocol at an Academic Medical Center. Poster #603.

Friday, April 14th, 2023

From 12:00 – 1:30 pm in the Regency Ballroom, UNMC ID has one poster presented during the ‘Networking Lunch with Posters’ session:

  • Scott Bergman, PharmD; Perioperative Cefazolin Prescribing Rates Following Suppression of Alerts for non-IgE Mediated Penicillin Allergies. Poster #581.
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Blood Culture Contamination? Can We Do Better? UNMC Investigates

What are blood cultures?

Blood cultures are a key diagnostic test for persons with sepsis and bacteremia where organisms are grown in the laboratory from patient blood samples to identify the causative agent of infection. Unfortunately, approximately 2-3% of cultures are contaminated, usually with common commensal skin microorganisms. Contaminated blood cultures can “trick” caregivers and result in a significantly longer length of hospital stay and treatment with unnecessary antibiotics. This can result in increased cost, toxicity, and the emergence of antibiotic resistance.

Can rapid blood culture techniques help?

Maybe. The use of molecular-based rapid blood culture systems can more quickly identify microorganisms as probable contaminants and may result in a decrease in the detrimental effects of blood culture contamination. This could include decreased hospital stay and duration of antibiotic treatment.


So, do clinicians use this new technology to result in improved patient outcomes? A recent article authored by Dr. Mark Rupp among other UNMC investigators investigates this question.

Dr. Rupp, co-author of a recent study examining the best way to detect bacteria in patient blood samples.

In a single-center, retrospective, cohort study, they compared hospital length of stay and antibiotic treatment associated with blood culture contamination before and after the introduction of a rapid blood culture identification system (BCID).

They examined the records of 305 patients with blood culture contamination in the pre-BCID and 464 patients with blood culture contamination in the post-BCID periods.

Unfortunately, there was no change in the length of hospital stay (10.8 days versus 11.2 days) and duration of antibiotic treatment (5.1 days versus 5.3 days) in the pre-BCID and post-BCID periods, respectively. Therefore, the authors conclude that the introduction of a rapid BCID system alone does not impact the length of stay and antibiotic treatment associated with blood culture contamination and the use of such systems should be coupled with robust education, antimicrobial stewardship efforts, and real-time decision support.

Read the full article here.

UNMC ID Leader Pursues Advanced Training

We are proud of our ID leaders for many reasons, one of which is their constant desire to improve and educate themselves and others for the betterment of patient care. One example of this is seeking out additional training at the national level and sharing that knowledge with those here at UNMC. Read on for a quick story of a successful training course and what it means for education and quality improvement at Nebraska Medicine.


“Nichole Regan is the Assistant Director for HIV Programs at the UNMC/Nebraska Medicine Specialty Care Center. She has been a great asset to the program in assisting with clinical directorship as well as directing the HIV Clinical Quality Management Program. She is leading the training of SCC staff on quality improvement. Her participation in this program is a great step towards improving understanding of the principles of QI amongst the staff and we hope to be able to spread this knowledge regionally as well.

– Dr. Nada Fadul

Nichole Regan, APRN, Assistant Director of HIV Programs at UNMC/Nebraska Medicine Specialty Care Center, attended the national Training-of-Trainers (TOT) Program on March 22-24, 2023, in Dallas, TX. The three-day, in-person training was presented by the HRSA Ryan White HIV/AIDS Program Center for Quality Improvement & Innovation (CQII). CQII will celebrate its 20-year anniversary later in the year and close to 2,000 individuals have graduated from its advanced trainings across the country.  The TOT is an advanced capacity-building training program for individuals with experience in clinical quality management, who wish to refine their skills in training others on quality improvement principles and practice. 

This year’s TOT began in February 2023 with several Zoom meetings as well as preparatory self-paced studies in quality management and adult learning principles. While in Dallas, the cohort of approximately 50 leaders across the U.S. in HIV care and quality management met in person for an intensive session comprised of didactic as well as hands-on, experience-oriented learning activities. The program culminated with a capstone project where participants had the opportunity to train each other regarding components of clinical quality management. In the next 4 months, participants will complete the program requirements by utilizing their training skills and resources to lead three clinical quality management trainings for other Ryan White program stakeholders.

To learn more about CQII and specific training programs and resources, visit: https://targethiv.org/CQII [targethiv.org]

It’s Giving Day at UNMC! Help Support the Diana Florescu Clinical Research and Education Excellence Endowed Fund

What is giving day?

UNMC Giving Day is a virtual day of giving and engagement in support of UNMC students, researchers and clinical partners. To honor the year of UNMC’s founding, this philanthropic event will last for 1,869 minutes (about 31 hours) beginning at 10 a.m. on March 30 and concluding at 5 p.m. on March 31.

Join us in support of those who selflessly commit their lives to helping others; unite with other UNMC alumni, friends, and grateful patients to develop the next generation of healthcare professionals.


How can I help?

Consider a gift to the Diana Florescu Clinical Research and Education Excellence Endowed Fund.  This fund was established to honor Dr. Florescu, creating a legacy to recognize her many accomplishments, and continuing the work to which she dedicated her life.  Diana demonstrated strongly held beliefs in the power of education and the value of clinical research, those same ideals to which the fund is dedicated.

Diana Florescu, MD.

Please consider demonstrating your support for UNMC, the ID Division, and Dr. Diana Florescu by donating to this fund to sustain education and clinical research efforts of the ID Division for decades to come.

Vincent Van Gogh stated “Great things are done by a series of small things brought together”  

Please consider making a donation, in any denomination, to continue the work of our friend and colleague who was taken from us all too soon. 

Please contribute online directly to the Nebraska Foundation on this webpage.

Written donations in memory of Diana Florescu, M.D. may be sent to the University of Nebraska Foundation, P.O. Box 82555, Lincoln, NE 68501-2555. Please ensure to include on the memo line or enclosed note that the gift is in memory of Dr. Diana Florescu.

Thank you for your consideration and your generosity.

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Research Digest: Research identifies how to improve ID healthcare

Research Digest is a periodic post summarizing the findings of a few recent articles published by our UNMC ID faculty surrounding a particular topic. These articles are linked below for full details on the work. This week, we discuss recent efforts by UNMC ID faculty to explore how we can make healthcare work better for patients, providers, and the community at large.


We spend a lot of time on this blog reviewing research about ID disease diagnosis, treatment, and outcomes- a critical aspect of healthcare progress. Equally important, however, is how we practice healthcare and what can be done to ensure that our practice evolves in pace with our knowledge. Today, we highlight a few recent articles authored by UNMC ID faculty which operationalize healthcare research tools to study healthcare itself. From COVID-19 responses to infection prevention and telehealth, read on to learn about how research can identify the best path forward in improving healthcare delivery.


Dr. Lawler, ID faculty, UNMC

The SARS-CoV-2 pandemic was an unprecedented time for the healthcare system. Crisis-level infection rates led many hospitals all across the nation to develop new strategies in real-time to try to optimize medical resource allocation and manage hospital capacity. This response was complicated by the lack of national or state-wide standards or crisis plans, leading to broadly divergent plans between hospital systems. The first article featured today, co-authored by Dr. Lawler and others from UNMC, explores the COVID-19 crisis responses of Nebraska and California to determine which aspects of their plans were effective and where each could have improved. With a focus on “ground truth”, or the actual experience of people on the frontlines, the paper argues that, among other aspects, stronger statewide coordination in future public health emergencies could benefit all states, no matter their demographics. Check out the complete comparison here.


Dr. Cortés-Penfield, ID faculty, UNMC

The second article, written by UNMC student Riley Ostdiek, Drs. Fadul and Cortés-Penfield, and other UNMC members, explore the best way to expand infection prevention training across the healthcare system. Traditionally, infection prevention training is offered to physicians and nurses, with few opportunities for this knowledge to reach other healthcare professionals. This study was designed to identify the best way to expand this training to reach a broader audience. Barriers to training as identified by surveyed nursing assistants and dental professionals included cost/lack of financial support as well as competing priorities and lack of time. Respondents also preferred self-paced learning modules as well as lecture-based delivery, both differing in preference by particular field of work. The authors conclude that a hybrid program including both shorter self-paced modules and prerecorded online lectures along with standard discussion with experts would be the most effective way to reach additional healthcare professionals and bypass the major barriers to participation. Click here for the full article.


Dr. Fadul, ID faculty, UNMC

Propelled by the SARS-CoV-2 pandemic, telehealth has become a major tool in the provider’s toolbelt to reach patients in a quicker, easier, and often safer way. The last article we feature today, co-authored by UNMC ID’s Nichole Regan and Precious Davis as well as Dr. Fadul, reviews the current state of telehealth utilization, particularly in HIV care. They conclude that, while powerful, disparity in the usefulness of this technology does exist. Racial minority groups, older adults, and individuals with low telehealth literacy report low preference, dissatisfaction, and experience poorer health outcomes than other groups. Lack of broadband access, compatible devices, standardization, and government regulations of telehealth in HIV care can contribute to poor patient-provider experience and utilization. Read their full report here.

Sepsis: the case for automatic antibiotic de-escalation

Sepsis is a life-threatening condition caused by an extreme immune response to infection which has often invaded the blood. In severe cases, this can lead to mortality in up to 50% of patients. Luckily, the treatment for this condition is straightforward: antibiotics. But identifying sepsis early enough for effective treatment can be complex. Some of the same hallmarks of sepsis can also be caused by various other illnesses including low blood pressure, lactic acidosis, and kidney or liver failure. This often leads to overprescription of antibiotics which can have serious consequences on patients (GI upset, C. Diff, medication side effects) and the community at large (increased antimicrobial resistance). But the risks of missing a sepsis diagnosis are profound, often leading to the empiric use of antibiotics in patients suspected of sepsis anyways. So, how do we balance antibiotic stewardship with ensuring a serious case of sepsis doesn’t go untreated?

This is exactly the question explored in a recent article in Clinical Infectious Diseases. UNMC ID’s Dr. Erica Stohs (pictured left) recently outlined this article as a SHEA journal club article, which we repost below. Read on to learn about a new strategy for antibiotic de-escalation in potential sepsis patients.


Reviewed by Erica Stohs, MD, MPH, University of Nebraska Medical Center

This multicentered randomized controlled trial evaluated an opt-out protocol to decrease unnecessary antibiotic use prescribed for non-ICU hospitalized patients with suspected sepsis.

Stewarding antibiotics has been challenging in the era of SEP-1 (sepsis management bundle regulation required by CMS), which did not incorporate the balancing measure of antibiotic overuse and its consequences. This RCT studied an opt-out intervention in which clinicians had to actively engage to continue antibiotics for carefully selected patients in whom broad-spectrum agents were initiated due to suspected sepsis. Suspected sepsis was defined as having no positive blood cultures at 48-96 hours and active orders for broad-spectrum antibiotics.

The study was directed at non-critically ill adults on broad-spectrum agents with negative blood cultures in ten hospitals between September 2018 to May 2020. Through detailed expert panel review and rigorous protocol development, investigators developed a 23-item safety checklist to determine if patients were eligible for the de-escalation opt-out protocol. For example, patients with ongoing signs and symptoms of infection (fever, leukocytosis, pneumonia, or related complications), concerning or incomplete microbiologic data, antibiotic pre-treatment, and immunocompromised status were excluded. If clinicians opted out (i.e., continued antibiotics), they discussed their rationale and future plan to de-escalate. In essence, this involved thorough audit and feedback. The primary outcome was post-enrollment days of therapy (DOT) up to 30 days. Secondary outcomes: 30-day safety events, including C diff infection, readmission, ICU admission, death, and relapse of suspected sepsis.

Of the nearly 10 thousand patients screened, only 767 (8%) were enrolled. Intervened patients had 32% lower odds of antibiotic continuation and were exposed to fewer days of extended-spectrum antibiotics (36% vs 44%). For patients in whom antibiotics were continued, DOT was similar. No safety issues were noted. Interestingly, despite a quite conservative safety checklist limiting eligibility, safety concerns were commonly cited by clinicians as reason to continue antibiotics. Addressing diagnostic uncertainty remains a challenge to expansion of an opt-out approach to antibiotic de-escalation in suspected sepsis.

Reference: Moehring RW, et al. Clinical Infectious Diseases 2023;76(3):433–442. DOI: 10.1093/cid/ciac787

Safety Awareness Week, Part 2: Infection Control and Antibiotic Stewardship

March 12th-18th marks patient safety awareness week, an initiative intended to encourage everyone to learn more about healthcare safety. Protecting patient safety is one of the most important responsibilities of the healthcare system and all its members. This week serves to recognize those who further patient safety and spark conversation on how we can continue to improve.


As part of Patient Safety Week, we want to recognize all of the incredible efforts from our Infectious Diseases colleagues focused on improving the safety and care of our patients here at UNMC/NMC. Earlier this week, we recognized the Nebraska Biocontainment Unit (NBU) personnel for their continued commitment to patient safety at all times of day and night. Two other key areas in which there is a significant commitment to patient safety, and often less recognition, are our Infection Control & Epidemiology (ICE) team and our Antibiotic Stewardship (ASP) team. 

Photo obtained from CDC Project Firstline

Just like our NBU team, our hospital ICE team, comprised of physician medical directors and a group of infection preventionists) has also been critical in our COVID and Mpox responses, along with past collaboration on many of the highly infectious pathogen preparations. The ICE team monitors and engages in quality improvement as it relates to hospital-acquired infections such as surgical site infections and central-line associated bloodstream infections (CLABSI), amongst many others. Some less well-known efforts also include investigation of infection outbreaks, ensuring the safety of hospital water to minimize any risk of water-borne infections, ensuring appropriate sanitation of all patient areas and equipment to minimize transmission risk, monitoring construction areas for risk to patient health, and much more. The ICE medical directors (Drs. Rupp, Cawcutt, Hankins, Ashraf and Van Schooneveld) also contribute to the overall expertise and leadership in this area via active research, publications, participation in guideline creation, and engagement regionally and nationally through various venues. Thank you ICE personnel for all you do to keep patients safe and prevent transmission of infectious diseases!

Second, our ASP team continues to demonstrate commitment to safety by ensuring patient safety related to exposure to antibiotics. This includes focused efforts of helping our medical teams get the ‘right antibiotic at the right dose for the right amount of time’ for our patients. All antibiotics have risks of side effects and adverse events, such as developing more drug-resistant bacteria or getting a C. diff infection; this team works to actively prevent such things from happening. This also extends to assessing safety for home-going IV antibiotics (via the OPAT program), which provides monitoring for side effects and dosing adherence for the duration of treatment. Here again, this team with medical directors Drs. Van Schooneveld, Marcelin, Stohs, Rupp, and Hankins, among a host of other stewardship professionals, continue to expand and share expertise as a Center for Excellence for ASP care via research, publications and regional and national engagement. Thank you to all members and contributors to the ASP program for keeping our patient population safe from antimicrobial resistance!